Seminarium z fizyki biologicznej i bioinformatyki
2014/2015 | 2015/2016 | 2017/2018 | 2018/2019 | 2019/2020 | 2020/2021 | 2021/2022 | 2022/2023 | 2023/2024 | 2024/2025 | Strona własna seminarium
Protein aggregation in biomolecular condensates: the case of α-synuclein in host-guest systems
Protein aggregation, associated with multiple neurodegenerative disorders, has been a topic of significant scientific interest for decades. However, it is only recently that the aggregation process has been recognized as being influenced by another biologically important phenomenon – liquid-liquid phase separation, which underlies the formation of membraneless organelles. Investigating the role of biomolecular condensates in protein aggregation is essential for understanding the mechanisms of amyloid formation and for identifying new strategies for treatment and prevention. In the talk, I will discuss the key factors through which the physical and chemical environment of a condensate can influence protein aggregation. I will also focus on the specific case of α-synuclein (one of the archetypal amyloid-forming proteins), its aggregation in the presence of model liquid condensates, and the role of condensate interfaces in this process.
References:
- B.S. Visser, W.P. Lipiński, E. Spruijt “The role of biomolecularcondensates in protein aggregation” Nature Reviews Chemistry, 2024,https://doi.org/10.1038/s41570-024-00635-w
- W.P. Lipiński, B.S. Visser, I. Robu, M.A.A. Fakhree, S. Lindhoud, M.M.A.E.Claessens, E. Spruijt “Biomolecular condensates can both accelerate andsuppress aggregation of α-synuclein” Science Advances, 2022,https://doi.org/10.1126/sciadv.abq6495
- B.S. Visser, M.H.I. van Haren, W.P. Lipiński, K.A. van Leijenhorst-Groener, M.M.A.E. Claessens, M.V.A. Queirós, C.H.I. Ramos, J. Eeftens, E. Spruijt, “Controlling interfacial protein adsorption, desorption and aggregation in biomolecular condensates” bioRxiv preprint, 2024, https://doi.org/10.1101/2024.10.20.619145
Synthesis of multifunctional magnetite-based nanoparticles for anticancer applications
Meeting ID: 919 7615 3012
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The seminar will be held in a hybrid version. We invite you to come in person and meet the Speaker.
Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
Polyphosphate and Liquid–Liquid Phase Separation in DNA Replication, Proteolysis and Proteins Acetylation
Meeting ID: 919 7615 3012
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Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
Self-assembly and recognition with peptide-based cages and macrocycles
Meeting ID: 919 7615 3012
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Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
Multi-scale simulations of galectin-3
Meeting ID: 919 7615 3012
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Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
Functional cooperation of XRN1 5'-3' exoribonuclease and DXO1 deNADdding enzyme in transcription regulation in Arabidopsis
Meeting ID: 919 7615 3012
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Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
Radiolabelled up-converting nanoparticles as theranostic agents for multimodal imaging and targeted therapy
Meeting ID: 919 7615 3012
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Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
Liquid-liquid phase separation of proteins and its role in neurodegenerative diseases
Meeting ID: 919 7615 3012
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Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
Healthcare 2035: A Vision of the Future
Meeting ID: 919 7615 3012
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Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
ABSTRACT
I will discuss the transformative potential of artificial intelligence (AI) in shaping the future of healthcare by 2035. Over the next decade, AI is set to influence every aspect of healthcare delivery, from diagnostics and treatment to patient care and operational efficiency. By harnessing advancements in machine learning, data analytics, and automation, healthcare systems have the opportunity to become more predictive, personalized, preventive, and participatory. Additionally, I will highlight key initiatives and pioneering efforts from my team at Massachusetts General Hospital and Harvard Medical School, showcasing how we are driving innovation at the forefront of this transformation.
Space and time as hypothesis selectors in biophysics
Meeting ID: 919 7615 3012
Passcode: 747922
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Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
Discovery and Characterization of Blood-Brain Barrier Modulating Peptides based on E-cadherin
Meeting ID: 919 7615 3012
Passcode: 747922
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Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
Evolving Crystal Surface Patterns: (2+1)-Dimensional Vicinal Cellular Automaton Study
Meeting ID: 919 7615 3012
Passcode: 747922
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Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)
Enhancing fetoscopic surgery through deep learning
Twin-to-Twin Transfusion Syndrome (TTTS) is a rare condition that affects about 15% of monochorionic pregnancies, in which identical twins share a single placenta. Fetoscopic laser photocoagulation (FLP) is the standard treatment for TTTS, which significantly improves the survival of fetuses. The aim of FLP is to identify abnormal connections between blood vessels and to laser ablate them in order to equalize blood supply to both fetuses. However, performing fetoscopic surgery is challenging due to limited visibility, a narrow field of view, and significant variability among patients and domains. In order to enhance the visualization of placental vessels during surgery, we propose TTTSNet, a network architecture designed for real-time and accurate placental vessel segmentation. To address the challenges posed by FLP-specific fiberscope and amniotic sac-based artifacts, we employed novel data augmentation techniques. These techniques simulate various artifacts, including laser pointer, amniotic sac particles, and structural and optical fiber artifacts. Our method achieved significant performance improvements compared to state-of-the-art methods. This potentially opens the door to real-time application during surgical procedures.
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https://zoom.us/j/91976153012?pwd=azNiMWE4UnhPN3lRQlY2UHZHOXVkQT09
Meeting ID: 919 7615 3012
Passcode: 747922
One tap mobile
+48223073488,,91976153012#,,,,*747922# Poland
+48223987356,,91976153012#,,,,*747922# Poland
Dial by your location
+48 22 307 3488 Poland
+48 22 398 7356 Poland
+48 22 306 5342 Poland
Bogdan Lesyng (UW)
Anna Niedźwiecka (IF PAN)
Piotr Zielenkiewicz (IBB)